Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VECKNNIADLLPCQAAAQSETSTPSTECCTAVGKFKD--------DPACLCSTIAAAQAAGF-TIDAPVAATIPKRCKLDGYPTSCSKSK
1SIY Chain:A ((1-78))
MTCGQVQGNLAQCIGFLQKG-GVVPPSCCTGVKNILNSSRTTADRRAVCSC--LKA-AAGAVRGINPNNAEALPGKCGVNIP--------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26777 for 495 contacts (-54.1/contact) +
2D Compatibility (PS) -7186 + (NN) -2892 + (LL) 232
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -41823.0 ( -84.49 by residue)
QMean score : 0.262
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: