Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVDCSAAQQAMFPCLSAAVGGNPPPPSVACCAAMKSV--SKLEMCQCL----VNQTSTVPGLN-----MTAARNIPANCNISAAADCS
3OB4 Chain:A ((429-488))
---------------------------ERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRC-
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19029 for 239 contacts (-79.6/contact) +
2D Compatibility (PS) -5356 + (NN) -4561 + (LL) 804
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -31242.0 ( -130.72 by residue)
QMean score : 0.339
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: