Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACSNNYIQLAGCLNAVSSSAGYPGSSCCTAVSHFKN--------DVNCLCSTLVAAKNAGV-IRNMPNALTVPKRCGFKNNIP--KNFRCAGYKVGS
1SIY Chain:A ((2-89))
TCGQVQGNLAQCIGFLQKG-GVVPPSCCTGVKNILNSSRTTADRRAVCSCL--KA-AAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNS-----
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22822 for 549 contacts (-41.6/contact) +
2D Compatibility (PS) -7855 + (NN) -1202 + (LL) 664
1D Compatibility (HY) -3600 + (ID) 1100
Total energy: -35915.0 ( -65.42 by residue)
QMean score : 0.249
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: