Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APIKVAGGVGNCEKDMQ------WCIDKTEFFTHGY-----------IYERCCYNMI-MKKKCMCLFLKS-----------PKLKIAARNVNNACGRGGLPKDAFSEFKC--
1S6D Chain:A ((1-103))
-PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECN--------LMSQPCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25637 for 451 contacts (-56.8/contact) +
2D Compatibility (PS) -7462 + (NN) -1903 + (LL) 68
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -37234.0 ( -82.56 by residue)
QMean score : 0.128
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: