Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPVCPLNQSELGICVNVLGLISITT--SNAAQCCSILAGLNNVSLVSVCACEAVRLNILNLLGITVNLNLRLNGLLGLCRLPVQPGFNCLL
2RKN Chain:A ((2-77))
IDLCGMSQDELNECKPAVS---KENPTSPSQPCCTALQHA-DFA----CLCGYKNSPWLGSFGV--DPELAS-ALPKQCGLANAP--TC--
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74344 for 501 contacts (-148.4/contact) +
2D Compatibility (PS) -7718 + (NN) -1661 + (LL) 1280
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -86193.0 ( -172.04 by residue)
QMean score : 0.286
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: