Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKEESELARIKSSKAVVSKTIKEGKQGRKIPIWLMRQAGRSLPEYR--RAVKDTSSFMEICYNTDLVVELTLQPVARFSMDAAIIFSDILIVADVLGCDVDFIRGVGPT----IKPVKNFKELRNPQKIETKTLPILNAIRKVRDKLPEEKSLIGFAGGPWTVASYIIEGRSSKTFSKV---LNLHPSSLEQIIEQITEVTISYLVKQIEFGADVIQLFDSNAGVLSGELFEECVIKPTKKIVSAIKGKFPD-----FPIIGFPKSAGSLYKDYCEKTGVSAVSIDYNVPIEWAKENL--KIPLQGNLNPSLLAYNKMEAIKETKRIIDCFRDLPFIFNLGHGVLPNTPIENIAALVDLVKSQ |
1R3V Chain:A ((25-360)) | -----------------------GEETDYTPVWCMRQAGRYLPEFRETRAAQD---FFSTCRSPEACCELTLQPLRRFPLDAAIIFSEILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAKD-GHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKH |
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General information:
TITO was launched using:
| RESULT:
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Template: 1R3V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -218369 for 2746 contacts (-79.5/contact) +
2D Compatibility (PS) -34105 + (NN) -8026 + (LL) 2380
1D Compatibility (HY) -24400 + (ID) 5850
Total energy: -288370.0 ( -105.01 by residue)
QMean score : 0.570
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