Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIVWYELTLFGVLTHIISNVFFPSESDYLSTIKFLGSFAVGFGFRPLGAFIFGYIGDKYGRRKVLLTSVILVSISSTAIAVIPDFKEIGILSPILLLLCRIVQGTAAGGETSINSAFLIEHSSDKKDLGFLGSMKAFSGALGSITCFLMIAIVKKFTGENYEIWGWRLLFYFCSIMGVIGFL-TRYIMEESLAYKTHDQNKSLSNSPFLELIRSYKKAFMIAIGLGIAQNAIVYSAIMFYNISVKELILSGIDIKNVVRIT-VEIT-FGTSAVLFAILSDKVGRKNVMVLILIALACAGLPAFSL-LSYDNHYIVTLTFLLISIPIGASFGIYNSLVCELLPTKVRCTGFSLAHNISAGIFGGISPSICMWLIEKTETELAAGFYLTMCALISLIYVLQIKTEDKKVDW |
| 2GFP Chain:A ((22-360)) | ----MAQTIYIPAIADMARDLNVRE-GAVQSV-----MGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL--------TVLIAASAMQGMGTGVGGVMARTLPRDLY-ERTQLRHANSLLNMGILVSPLLAPLIGGLLD-------TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR---TRLLTSYKTLFGN-SGFNCYL-LMLIGGLAGIAAFEA-CSGVLMGAV-LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAG-LLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQ-NIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVLCWLPL----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GFP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -244914 for 2747 contacts (-89.2/contact) +
2D Compatibility (PS) -32187 + (NN) 8954 + (LL) 3532
1D Compatibility (HY) -14000 + (ID) 2350
Total energy: -280965.0 ( -102.28 by residue)
QMean score : 0.123
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