Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSKTCNAIKRLLQKESSFVGKDENGNSYYESSEGKRWVMYSNVSEPTTVSPEWHVWLHYTDDAMPVNSKKRKIKRIPNLTGTKDAYYPNQKIKNYYERWNPNN
2NT9 Chain:A ((284-316))
--------------------GKDKNGNTIWFNPEDSRFFEYKSYGAGATVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP-------------------------
General information:
TITO was launched using:
RESULT:
Template:
2NT9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4657 for 100 contacts (46.6/contact) +
2D Compatibility (PS) -3909 + (NN) -4861 + (LL) 3648
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -3465.0 ( -34.65 by residue)
QMean score : 0.285
(partial model without unconserved sides chains):
PDB file :
Tito_2NT9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NT9-query.scw
PDB file :
Tito_Scwrl_2NT9.pdb
: