Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEEKIPKNKQEQLGQPKIPVSSQVSNTQNNNQQPNLQSENGSKLPIAAASMLAITGIAFRGSYCSLPRNVSSRNSNRGLLSCCYYNPISL
2VDA Chain:B ((8-22))
-----------------------------------------RRKLPLAVAVAAGVMSAQAMA-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VDA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -815 for 47 contacts (-17.3/contact) +
2D Compatibility (PS) -1676 + (NN) -1095 + (LL) 2584
1D Compatibility (HY) -400 + (ID) 250
Total energy: -1652.0 ( -35.15 by residue)
QMean score : 0.012
(partial model without unconserved sides chains):
PDB file :
Tito_2VDA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VDA-query.scw
PDB file :
Tito_Scwrl_2VDA.pdb
: