Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKSDILCKRVIGIVGSGQLGKMTAIAATKLGQETHIFANAKDDPACSVANNLTIADFSDKKALESFAQSVSLVTIESENIPCDAIDIMSQYVDFYPGKRALHISQNRLREKDFIRNLGIRTADYKSIQDHNDLLEVTRAFGYPTRLKTTEMGYDGKGQYMIGNDSQVERFASF--DWNAQYILEASVDLLKEVSIVVTRDKNGKVAFFPVAENHHVDGILDTSIVPAKVDSKLVQEIQQTAEKIADALDVVGILAIEFFITKNSELLVNELAPRPHNSCHWSLDACNVSQFEQLIRVICKLPMQEVVLRFPCMTKNIIGNDVYNTYKYLSDKRANLTIYGKKEVRGRRKMGHVNIDLS |
| 4MAM Chain:A ((3-344)) | -----------IGIIGAGQLARMLSLAGTPLGLEFHCLGK-NGDCAEEVVKTVTDIELTKVNDVVAWAKQFDVITFENENISHELIKAINHEVSVYPSAKAIAISQDRLLEKSFMQDHGIATAKFVNIDSLAKLQSAVDDHGLPAILKTRRFGYDGKGQFVIRSQEDITKAWDVLKDAPDGLIYEAFVDFDYEVSQICTADLKGNIAFYPLARNTHKQGIIVESEAPFE-NVVLAEKAQQIAKILVKEFAYVGTLAIEFFV-KGDELIVNEIAPRVHNSGHWSIDGAVTSQFENHVRAIAGLILGDTTSRKTVMLNCIGGMPATKDLAALD--RVKIHSY-NKEPRKGRKVGHLNLNLN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MAM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -175490 for 2911 contacts (-60.3/contact) +
2D Compatibility (PS) -37504 + (NN) -12168 + (LL) 1136
1D Compatibility (HY) -21200 + (ID) 6450
Total energy: -251676.0 ( -86.46 by residue)
QMean score : 0.383
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