Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIGNASKELGKLIANKLNVQPFSAQVSKFADGAINAEVESNLCSQEVYIIQSISPPVNDHLMELLFIIDAVKRSGTKRITTIIPYYGYSRQDRIIKNNNMQSALNAKLVANLIQTAGASSVAVIDLHSSQIEGFFDVPLTNLSCFEAFADSIH-----IENLAIVAPDVGAIGRARAFAKTLEKKYEIKLSDKIIIIDKYREKAGTSHVMNVIGEATNKNCVIVDDIVDSGGTLCNAALALKNRRARSVISCITHGVLSGNAIEKISSSSLDKLVTTDTIFH--KLEKTDKIEIVSIANILTHFIQGGKDAS
4LYG Chain:A ((4-301))
IKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVTIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQD---KKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFA--------LIHKE-------DRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGE
General information:
TITO was launched using:
RESULT:
Template:
4LYG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -255329 for 2419 contacts (-105.6/contact) +
2D Compatibility (PS) -31396 + (NN) -16891 + (LL) 1584
1D Compatibility (HY) -25600 + (ID) 5050
Total energy: -332682.0 ( -137.53 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_4LYG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LYG-query.scw
PDB file :
Tito_Scwrl_4LYG.pdb
: