Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVFGLHHFNYTLKKNKNDVAKALFEYGAKIDVDYVEERLIISGTTEYSQSTVEILLPYASI
1SM2 Chain:A ((18-50))
--FGLVHLGYWL--NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAP
General information:
TITO was launched using:
RESULT:
Template:
1SM2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1125 for 144 contacts (7.8/contact) +
2D Compatibility (PS) -3171 + (NN) 2623 + (LL) 528
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -1645.0 ( -11.42 by residue)
QMean score : 0.057
(partial model without unconserved sides chains):
PDB file :
Tito_1SM2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM2-query.scw
PDB file :
Tito_Scwrl_1SM2.pdb
: