Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNRSTDTKRKEMIELKGPEICTDRSRENLIVCLHGRGSSGNNFVHLAKVMSKSLPNSCFVAPNAPSKREIGN-GYQWFSLEDRSEEVLYNGVKNAASIVNHFIDTKLKEFSLKDTQLSLVGFSQGAMLAIHTALTRPQCCASV--VAYSGKFLSPSRVA--PKIKSRPNVCVIHGDADNVVPFSFFDLTVKALKENGVNVEGYPIRTLGHLINKEGIKLGVEFIKKNFKK
3WYD Chain:A ((39-188))
-----------------------------LVIALHGMGGDENSYF-------DSYQRGAFMI-------EAENRGYIVACPKG------Y--VGPAERDVMDVIAEVRRDYKIDPDRIYMTGHSMGGYGTWSIAMNHPDVFAALAPVAGGGNPLGMANIAHIPQL-------VVHGDNDKTVPVERSRVMVEAAKKHGTEIKYIEIPGGDHVSVAARTFKDVFDWFDSHKR
General information:
TITO was launched using:
RESULT:
Template:
3WYD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114722 for 1059 contacts (-108.3/contact) +
2D Compatibility (PS) -15110 + (NN) -8288 + (LL) 2996
1D Compatibility (HY) -8000 + (ID) 2000
Total energy: -145124.0 ( -137.04 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_3WYD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WYD-query.scw
PDB file :
Tito_Scwrl_3WYD.pdb
: