Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYKALITCFIFLVCSFTRSYASDDVHLEKSETELYEEAVELFDQKKYKQAIRAFRKIEDLYPFSYWAMKAKLLSGISHYNMDDYSSAASDMDDYIYIYPNGEDLPYVYYLRVLSYYMQINRVQLGQQTAYKALELAAEYVNLFSESEYIEEMKEKVRLITDHILKKEYSIGKFYFRRGEYLAAIKRFQNII-SSKDYSYFPRSINYLIAAY----------SALGLDLEAGQYESLLAENLKENTVEQ
3QKY Chain:A ((30-249))
--------------------------RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR
General information:
TITO was launched using:
RESULT:
Template:
3QKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95337 for 1609 contacts (-59.3/contact) +
2D Compatibility (PS) -22584 + (NN) -12277 + (LL) 2408
1D Compatibility (HY) -6400 + (ID) 2400
Total energy: -136590.0 ( -84.89 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_3QKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QKY-query.scw
PDB file :
Tito_Scwrl_3QKY.pdb
: