Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITLDGRLVAHKHINVNKGELAHRHSTLAGGKPVL--CP-VLKVEKGKITYIGNNSEHYKPALANLYNAVKN
3DM8 Chain:A ((96-122))
----------------------------GTNRPISVRMALFTQFQNGRLTNLRMVLDTFDLVEQALGR----
General information:
TITO was launched using:
RESULT:
Template:
3DM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2676 for 70 contacts (-38.2/contact) +
2D Compatibility (PS) -2781 + (NN) 900 + (LL) 2308
1D Compatibility (HY) -1200 + (ID) 150
Total energy: -3599.0 ( -51.41 by residue)
QMean score : 0.654
(partial model without unconserved sides chains):
PDB file :
Tito_3DM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DM8-query.scw
PDB file :
Tito_Scwrl_3DM8.pdb
: