Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVPTVVIDLVDQLKGNYSIKLI-------------LEVLNIPKSTYYRWKNKTYKNDTVTQKVIELCEANHY----TYGYRKITALINQCYTSPINHKRVQRMMQKHHLNCRVRPKKTTRIGKPYYKTDNLLQR
4LO0 Chain:C ((12-91))
--------------GNYNIKSIFSGSLYLNPVSKSLTFSNESSANNQKW-NVEYMAENRCFKISNVAEPNKYLSYDNFGFISLDSLSNRCYWFPI---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4LO0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7315 for 299 contacts (-24.5/contact) +
2D Compatibility (PS) -6760 + (NN) 1088 + (LL) 4176
1D Compatibility (HY) -3200 + (ID) 1100
Total energy: -13111.0 ( -43.85 by residue)
QMean score : 0.190
(partial model without unconserved sides chains):
PDB file :
Tito_4LO0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LO0-query.scw
PDB file :
Tito_Scwrl_4LO0.pdb
: