Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSIVLFLIVFILLSLIVSRYLYSVALNVPSKIDVVFNPIEKLIYQLIGTKLEHMSGKTYIKHFLLFNGLMGGLSFVLLLIQQWLFLNPNHNLNQSVSLAFNTMASFLTNTNLQHYAGETDLSYLTQMCVITFLMFTSAASGYAVCIAMLRRLTGMTDVIGNFYQDITRFIVRVLIPFALIISLFLISQGTPQTLKGNLVIETLSGVKQTIAYGPMASLESIKHLGTNGGGFLGANSSTPFENPTYWSNYAEALSMMLIPGSLVFLFG-RMLKTKLQIHPHAIMIFVAMFVMFIGFLVTCLYF-EFAGN-PVLHHLGIAGGNMEGKETRFGIGLSALFTTITTAFTTGTVNNMHDSLTPLGGMVPMVLMMLNAVFGG-EGVGLMNMLIYVMLTVFICSLMIGKTPSYLGMKIEGKEMKLIALSFLVHPLLILVFSALAFI-VPGASDALTNPQFHGVSQVLYE-FTSSSANNGSGFEGLGDNTVFWN-ISTGIVML------LARYI-PIV--------LQILIVSSLVNKKTYQQHTQDVPINNLFFSSVLIIFIILLSGLTFLPDLMLGPIGEQLLLHA |
| 3GN6 Chain:A ((22-321)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FNPWTDAALDTIVNQALTLYAEMRVVPAHHDAFLAAIDTVSAKLRVLPGFLSLALKQMSGDSTMVKNYPETYKGVLATAYLDGVAAGTQPYFYNLFVRFADGRAARA-------AGFEALFETHIHPLLHAMADGPEL-----LAYRAVLQSVVAGDRHAIYR---GAEEIRSFLRRPVELPERE-TVTVENHVMVPEDKHAAWEPQVAILLQVAQDTFEPQDEPSGVGLPGARDNRYYRKALSTEILRNAHADGGLRAYIMHGVWESVWDHENSHLDPRFLAAAGPVGAAAVVGPVEPFYLTRRLVVAD------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GN6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -235472 for 2077 contacts (-113.4/contact) +
2D Compatibility (PS) -29336 + (NN) -5241 + (LL) 22396
1D Compatibility (HY) -2000 + (ID) 2200
Total energy: -251853.0 ( -121.26 by residue)
QMean score : 0.186
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