Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MTKRQMGIFIYAGIIGGLLSGIVKLGWEVMFPPRTPERNATNPPQELLQQLGFSSEFTHQTYTFSNMELPWVSFIVHFSFSIVIAIIYCILVKKYAYLAIGQGAVFGIAIWVLFHLIIMPIMHTVPAVWDQPYQEHLSEFFGHIVWMMTIELVRQHFVYRYKLN---------
1K8K Chain:F ((2-167))
TATLRPYLSAVRATLQAAL--CLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQA-----DEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMY-KHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKN
General information:
TITO was launched using:
RESULT:
Template:
1K8K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119388 for 1094 contacts (-109.1/contact) +
2D Compatibility (PS) -15765 + (NN) -2115 + (LL) 944
1D Compatibility (HY) -2000 + (ID) 1250
Total energy: -139574.0 ( -127.58 by residue)
QMean score : 0.146
(partial model without unconserved sides chains):
PDB file :
Tito_1K8K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K8K-query.scw
PDB file :
Tito_Scwrl_1K8K.pdb
: