Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTGFSVYLGQPLDEAYIKRMIKQGYQMIFTSVQI-----------------PEEDDETKYHYFTKLLNLLKYEQVTYLIDANPSILTPSFYEHLRQYDAQFMIRIDHSTSIEAIEAIMAQGLKCCLNASIISRELLTSLHQQLNDFTLLSFCHNYYPRPDTGLSVDLVNKKNELIYQFNPKAQIYGFIVGSGLRGPLHKGLPTIEATRHSHPVVAAKLLQETGVSEVLVGDSLIEMRQAKQLIDFCKHRHFTLCIEEVFDTTVTYLFDMCHKVRPDNPENVIRSETSRQICPHSIQPQFTTQRRIGSVTVDNLNNGRYQGEMQIVRQTLSAHDNVNVVAQIIKEDLPLLSCIEPNDTFDFQKTRECKK |
3VGF Chain:A ((122-191)) | -------------IRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYG-GPEGFRKLVDEAHKKGLGVILDVVYN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -19249 for 282 contacts (-68.3/contact) +
2D Compatibility (PS) -5744 + (NN) -5197 + (LL) 20760
1D Compatibility (HY) 0 + (ID) 300
Total energy: -9730.0 ( -34.50 by residue)
QMean score : 0.547
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