Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNTFLICDECQAVNIRTLQKKLEKLDPDAEIVIGCQSYCGPGRRKTFTFVNNRPLAALTEEELI-EKVSQQLKKPRDPEEEERLRKRHEERKRRKEEQDRKLKEKLEKRKAQQ
1RJ9 Chain:B ((122-177))
--------------------------------------YKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR--------------------
General information:
TITO was launched using:
RESULT:
Template:
1RJ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 15669 for 285 contacts (55.0/contact) +
2D Compatibility (PS) -6200 + (NN) -5802 + (LL) 4984
1D Compatibility (HY) -800 + (ID) 950
Total energy: 6901.0 ( 24.21 by residue)
QMean score : 0.263
(partial model without unconserved sides chains):
PDB file :
Tito_1RJ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RJ9-query.scw
PDB file :
Tito_Scwrl_1RJ9.pdb
: