Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNTKYFLAVGAVASVLTLGACGNSNSQDQGNKTEQKTKSEDSNVKTDKTKHLTGTFSSKNGETVEGKAEIKNGKLMLTNYKSSKGPDLYVYLTKNGDIKNGKEIAMVDYDKEKQTFDLKNVDLSKYDEVTIYCKKAHVIFGGAKLK |
3GXP Chain:A ((81-143)) | --------------------------------------------------------------------RFPHGIRQLANYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFD--GCYC------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GXP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 9078 for 374 contacts (24.3/contact) +
2D Compatibility (PS) -6787 + (NN) -1383 + (LL) 4004
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: 1012.0 ( 2.71 by residue)
QMean score : 0.074
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