Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYFVLAIFTIISASVSLGYSIQACASSHNINAYYALSRSLPLFLLAIFSLVIHSAIFLITISIAMILVQFLDAIVGYKSEDVFKTYGPLATSVVNLILLIVFLF--
1RYJ Chain:A ((4-73))
-MVIGMKFTVITDD---GKKILESGAPRRIKDVLGE----------------------LEIPIETVVVKKNGQIV-IDEEEIFDG---------DIIEVIRVIYGG
General information:
TITO was launched using:
RESULT:
Template:
1RYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68272 for 410 contacts (-166.5/contact) +
2D Compatibility (PS) -7623 + (NN) -1782 + (LL) 3320
1D Compatibility (HY) -7200 + (ID) 750
Total energy: -82307.0 ( -200.75 by residue)
QMean score : 0.235
(partial model without unconserved sides chains):
PDB file :
Tito_1RYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RYJ-query.scw
PDB file :
Tito_Scwrl_1RYJ.pdb
: