Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDE-FSLNAFNLYGALSMANSG----PNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
2QER Chain:A ((19-171))
-----------------VRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESIYGRYFDDEIYPELKYDRRGILSMAS--ASKKPNTNGSQFFITY----------------------------SSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDI----
General information:
TITO was launched using:
RESULT:
Template:
2QER.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58551 for 1136 contacts (-51.5/contact) +
2D Compatibility (PS) -15577 + (NN) -7198 + (LL) 2756
1D Compatibility (HY) -10800 + (ID) 3350
Total energy: -92720.0 ( -81.62 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_2QER.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QER-query.scw
PDB file :
Tito_Scwrl_2QER.pdb
: