Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNKLIAKSLLTIAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVR |
1D8J Chain:A ((62-74)) | --------------------------------------------NPKIEVIDGKYAF------------------------------------------------------------------------------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1D8J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -1766 for 39 contacts (-45.3/contact) +
2D Compatibility (PS) -1414 + (NN) -1008 + (LL) 11048
1D Compatibility (HY) -1200 + (ID) 150
Total energy: 5510.0 ( 141.28 by residue)
QMean score : 0.456
|
|
|