Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MSQWKRISLLIVFALVFGIIAFF-HESRLGKWIDNEVYEFIYSSESFITTSIMLGATKVGEVWAMLCISLLLVAYLML----KRHKIEALFFALTMALSGILNPALKNIFDRERPTLLRLIDI--------TGFSFPSGHAMGSTAYFGSGIYLLNRLNQGNSKGILIGLCAAMILLISISRVYLGVHYPTDIIAGIIGG--VFCIILSTLLLRNKLIN----------
1D2T Chain:A ((7-230))
GNDTTTKPDLYYLKNSEAINSLALLPPPPAVGSIAFLNDQAMYEQGRLLRNTERGKLAAEDANLSSGGVANAFSGAFGSPITEKDAPALHKLLTNMIEDAGDLATRSAKDHYMRIRPFAFYGVSTCNTQDKLSKNGSYPSGHTSIGWATALVLAEIN---------PQRQNEILKRGYELGQSRVICGYHWQSDVDAARVVGSAVVATLHTNPAFQQQLQKAKAEFAQHQK
General information:
TITO was launched using:
RESULT:
Template:
1D2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -214415 for 1664 contacts (-128.9/contact) +
2D Compatibility (PS) -18786 + (NN) 11100 + (LL) 20
1D Compatibility (HY) 7200 + (ID) 1350
Total energy: -216231.0 ( -129.95 by residue)
QMean score : 0.318
(partial model without unconserved sides chains):
PDB file :
Tito_1D2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D2T-query.scw
PDB file :
Tito_Scwrl_1D2T.pdb
: