Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
1PTF Chain:A ((66-86))
-------DGADEAEGMAAIVETLQKEGL------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1PTF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2892 for 76 contacts (38.1/contact) +
2D Compatibility (PS) -2421 + (NN) -2541 + (LL) 3428
1D Compatibility (HY) -800 + (ID) 100
Total energy: 458.0 ( 6.03 by residue)
QMean score : 0.802
(partial model without unconserved sides chains):
PDB file :
Tito_1PTF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PTF-query.scw
PDB file :
Tito_Scwrl_1PTF.pdb
: