Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKVIGLTGGIASGKSTVSELLSVFGFKVVDADKAAREAVKKGSKGLAQVREVFGDEAIDENGEMNRRYMGDLVFNHPEKRLELNAIIHPIVRDIMEEEKQEYLKQGYN-VIMDIPLLFENELENTVDEVWVVYTSESIQMDRLMQRNNLSLEDAKARVYSQISIDKKSRMADHVIDNLGDKLELKQNLERLLEEEGYIEKPNYGEED
2F6R Chain:A ((77-264))
---VLGLTGISGSGKSSVAQRLKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERDGLSEAAAQSRLQSQMSGQQLVEQSNVVLSTLWESHVTQSQVEK-----------------
General information:
TITO was launched using:
RESULT:
Template:
2F6R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60384 for 1433 contacts (-42.1/contact) +
2D Compatibility (PS) -20808 + (NN) -8940 + (LL) 920
1D Compatibility (HY) -11200 + (ID) 2650
Total energy: -103062.0 ( -71.92 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_2F6R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F6R-query.scw
PDB file :
Tito_Scwrl_2F6R.pdb
: