Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLYTSYGTYGFLHQIKINNPTHQLFQFSASDTSVIFEETDGETVLKSPSIYEVIKEIGEFSEHHFYCAIFIPSTEDHAYQLEKKLISVDDNFRNFGGFKSYRLLRPAKG-TTYKIYFGFADRHAYEDFKQSDAFNDHFSKDALSHYFGSSGQHSSYFERYLYPIKE
1IUJ Chain:A ((2-99))
------------------------------------------------------------------FVTMNRIPVRPEYAEQFEEAFRQRARLVDRMPGFIRNLVLRPKNPGDPYVVMTLWESEEAFRAWTESPAFKEGHARSGTL--PKEAFLGPNRLEAFEVVL--
General information:
TITO was launched using:
RESULT:
Template:
1IUJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35138 for 623 contacts (-56.4/contact) +
2D Compatibility (PS) -10906 + (NN) -7570 + (LL) 4608
1D Compatibility (HY) -3200 + (ID) 850
Total energy: -53056.0 ( -85.16 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_1IUJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IUJ-query.scw
PDB file :
Tito_Scwrl_1IUJ.pdb
: