Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -----MNYSSRQQPDKHWLRKVDWVLVATIAVLAIFSVLLINSAMGGGQYSANFGIRQIFYYILGAIFAGIIMFISPKKIKHYTYLLYFLICLLLIGLLVIPESPITPIINGAKSWYTFGPISIQPSEFMKIILILALARVVSRHNQFTFNKSFQSDLLLFFKIIG-----VSLVPSILILLQNDLGTTLVLAAIIAGVMLVSGITWRILAPIFITGIVGAMTVILGILYAPALIENLLGVQLYQMGRINSWLDPYTYSSGDGYHLTESLKAIGSGQLLGKGYNHGEVYIPENHTDFIFSVIGEELGFIGSVILILIFLFLIFHLIRLAAKIEDQFNKIFIVGFVTLLVFHILQNIGMTIQLLPITGIPLPFISYGGSALWSMMTGIGIVLSIYYHEPKRYVDLYHPKSN |
4R8G Chain:E ((5-332)) | RRQSLATKIQAAWRGFHWRQKFLRVKRSAICIQSWWRGTLGRRKAAKRKWAAQTIRRLIRGFILRH---------SPRCPENAFFLDHVRASFLLNLRRQLPRNVLDT------SWPTPPPALREASELLRELCMKNMVWKYCRSISPEWKQQLQQKAVASEIFKGKKDNYPQSVPRLFI--STRLGTEEISPRVLQSL---GSEPIQYAVPVVKYDRKGYKPRPRQLLLTPS------AVVIVEDAKVKQRIDY------------ANLTGISVSSL--------------SDSLFVLHVQKQK----GDVVLQS------DHVIETLTKTALSADR--------------VNNININQGSITFAGGP------GRDGIIDFTSGSELLITK---AKNGHLAVVAPRL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R8G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189668 for 1995 contacts (-95.1/contact) +
2D Compatibility (PS) -33802 + (NN) -14603 + (LL) 7576
1D Compatibility (HY) -4800 + (ID) 2800
Total energy: -238097.0 ( -119.35 by residue)
QMean score : 0.154
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