Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHPRKT------------LQLPLILKIILNLAL-------IGIVIIVLTHTEFQLNA-----GDSNVFLLNWDIRGLTSYIFSFLILVALVSKLILIFITRRQRTS-----
2X4J Chain:A ((16-136))
FFTNKIGCNVSSPLKHVDIVGEIVEEAVYNFLIDAGDKMCVGNKIGVWKVSRKSLYAKVPKGIGVTVYLANGRVQGRLIDIGVYEVLVEEVG--DIIYIHKDLVYALCWPK
General information:
TITO was launched using:
RESULT:
Template:
2X4J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55663 for 472 contacts (-117.9/contact) +
2D Compatibility (PS) -7994 + (NN) 3369 + (LL) 240
1D Compatibility (HY) -4800 + (ID) 850
Total energy: -65698.0 ( -139.19 by residue)
QMean score : 0.088
(partial model without unconserved sides chains):
PDB file :
Tito_2X4J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2X4J-query.scw
PDB file :
Tito_Scwrl_2X4J.pdb
: