Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELWPAIDLIGSTSVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQYAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAY---GED-IKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLN---VHAAIIGKAAHQASFWEGLE
2Y88 Chain:A ((5-233))
---LLPAVNVVEGRAVRLVQGKAGSQTEYGSAVDAALGW--QRDGAEWIHLVDLDAAFGRGSNHELLAEVVGKLDVQ-VELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGG-DLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRF-----
General information:
TITO was launched using:
RESULT:
Template:
2Y88.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101614 for 1983 contacts (-51.2/contact) +
2D Compatibility (PS) -24044 + (NN) -6863 + (LL) 1048
1D Compatibility (HY) -15600 + (ID) 3250
Total energy: -150323.0 ( -75.81 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_2Y88.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y88-query.scw
PDB file :
Tito_Scwrl_2Y88.pdb
: