Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNTTQKSLLVFMGVFFLIFGVDQAIKHAILEGFHYESLVIDIVLVFNK-GVAFSLLSFLEGGLKYLQIL----LILGLFIFLMRQKELFKSHAIEFGMVFGAGVSNVLDRFVHGGVVDYVYYHYGFDFAIFNFADVMID-VGVGVLLLRQFFFKQKQNKIKGIITLFK
4K0D Chain:A ((5-147))
IAASADAQLELIGPRAAAAASLESAVLHVSLTARAYALTPEP-----ARMDALQAALRRLEGAAARFAALPKSPEGAALSGRILAAVPPFEKAAVALGTAVATG---------------------GDDSAIRAREATLPPMREELLSLLRTFGALQQAHDAGASHTILA
General information:
TITO was launched using:
RESULT:
Template:
4K0D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102187 for 922 contacts (-110.8/contact) +
2D Compatibility (PS) -14032 + (NN) -8081 + (LL) 2308
1D Compatibility (HY) 6800 + (ID) 1250
Total energy: -116442.0 ( -126.29 by residue)
QMean score : 0.255
(partial model without unconserved sides chains):
PDB file :
Tito_4K0D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K0D-query.scw
PDB file :
Tito_Scwrl_4K0D.pdb
: