Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIFGTDGVRGKAGVKLTPMFVMRLGIAAGLYFKKHSQTNKILIGKDTRKSGYMVENALVSALTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNPFEDNGIKFFNSYGYKLKEEEERAIEEIFHDEELLHSSYKVGESVGSAKRIDDVIGRYIAHLKHSFPKHLNLQKLRIVLDTANGAAYKVAPVVFSELGADVLVINDEPNGCNINEQCGALHPNQLSQ---EVKKYRADLGFAFDGDADRLVVVDNLGNIVHGDKLLGVLGVYQKSKNALSSQAV-VATSMSNLALKEYLKSQDLELKHCAIGDKFVSECMRLNKANFGGEQSGHIIFSD-YAKTGDGLVCALQVSALVLESKLVSSIALNPFELYPQSL----VNLNI---QKKPPLESLKGYSAL----LKELDQLEIRH-----LIRYSGTENKLRILLEAKDEKLLESKMQELKEFFEGQLC |
| 2H5A Chain:X ((13-452)) | --IFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC-VAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGSHNPPDYNGFKIVVA-GETLANEQIQALRERIEKNDL-------ASGVGSVEQV-DILPRYFKQIRDDIAMA---KPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWK---TGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSE---HVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELE----RIKTVFRNQLK |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2H5A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -178492 for 3839 contacts (-46.5/contact) +
2D Compatibility (PS) -43917 + (NN) -15208 + (LL) 2268
1D Compatibility (HY) -24400 + (ID) 6050
Total energy: -265799.0 ( -69.24 by residue)
QMean score : 0.441
|
|
|