Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MPKMKTNRGASKR---FKVKKNL-------IKR-------GSAFKSH------ILTKKSPKRKA-NLNAPKHVHH-TNAHSVMSLLCRA
3G1J Chain:A ((0-89))
GVDRDYLQSEYGVLKAGQCYKVVRSFRDYRNINYERGDVMRFLGSNFVPYESGLSLFFDKNGSERQIMLCVRPEF--QMEIAHHLDSYFCKL
General information:
TITO was launched using:
RESULT:
Template:
3G1J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 24985 for 247 contacts (101.2/contact) +
2D Compatibility (PS) -5708 + (NN) 4908 + (LL) 236
1D Compatibility (HY) 2000 + (ID) 100
Total energy: 26321.0 ( 106.56 by residue)
QMean score : 0.279
(partial model without unconserved sides chains):
PDB file :
Tito_3G1J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G1J-query.scw
PDB file :
Tito_Scwrl_3G1J.pdb
: