Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRADNRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTND
4HNQ Chain:A ((5-123))
MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPML-KKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREAIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE---
General information:
TITO was launched using:
RESULT:
Template:
4HNQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74518 for 905 contacts (-82.3/contact) +
2D Compatibility (PS) -13301 + (NN) -8509 + (LL) -276
1D Compatibility (HY) -14400 + (ID) 3050
Total energy: -114054.0 ( -126.03 by residue)
QMean score : 0.676
(partial model without unconserved sides chains):
PDB file :
Tito_4HNQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HNQ-query.scw
PDB file :
Tito_Scwrl_4HNQ.pdb
: