Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAHKERLESNLLELLQEALASLNDSELNSLSVTKVECSKGKHHALVFV-L-SSDHKILSKLKKAEGLIRQFVLQASGWFKCPKLSFVLDDSLEKQLRLDAIFNEIAKGKDND
2DYJ Chain:A ((4-93))
---GKAHLEAQLKRALAEEIQALEDPRLFLLTVEAVRLSKDGSVLSVYVEAFREEEGALRALSRAERRLVAALARRVRMRRLPRLEFLPWRASP-------------------
General information:
TITO was launched using:
RESULT:
Template:
2DYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62424 for 620 contacts (-100.7/contact) +
2D Compatibility (PS) -10024 + (NN) -6717 + (LL) 1588
1D Compatibility (HY) -4400 + (ID) 1150
Total energy: -83127.0 ( -134.08 by residue)
QMean score : 0.631
(partial model without unconserved sides chains):
PDB file :
Tito_2DYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DYJ-query.scw
PDB file :
Tito_Scwrl_2DYJ.pdb
: