Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDKMNKVVLHKEYSGFVRFFHWVRALSIFTLIATGFYIAYPFLQPNSSFYKG------VYLLQAYVRSFHVMFGFLLISALIFRTYLFFTKESLMERRSFSQLLSPKAWIDQMKAYFLISDKPHTKGLYNPIQLVAYFTLVVLIVLMSLSGIVLYYNVYHEGLGAFLANAFKWFEALCGGLANVRFIHHLATWGFILFVPVHVYMVFFHSIRYDSSGADSMINGYGYTKE |
1PP9 Chain:C ((34-101)) | --------------------GSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYTFLETWNIGVILLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFILPFIIMAIAMVHLLFLHETGSNNPTGISSDVDKIPFHPYYTIKDILGALLLILALMLLV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PP9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -33289 for 329 contacts (-101.2/contact) +
2D Compatibility (PS) -6345 + (NN) -1642 + (LL) 1740
1D Compatibility (HY) -3600 + (ID) 350
Total energy: -43486.0 ( -132.18 by residue)
QMean score : 0.059
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