Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRSLAFCLLALLGLQVLGA---RDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKALSAEDAKKFRANFSRIARKNLSKMSEEDFKKMREEVRKELEEKTKGLSAEEIKAKGLNVSVCSGDTRKVWCRAVKKKDEHCSPK
4K0J Chain:A ((522-583))
-RTAIGIAVATLVGVMILGATIGRDFLPYLDEGSIWLQVTLPPGISLEKAGQMADNLRAATMEFPEVEHVVTQVGRNDEGTDPFSPSHIETAVTLHPYSTWTSGRDKQQLIEAMATRFRDLPGTQVGFSQPMIDGVLDKLAGA
General information:
TITO was launched using:
RESULT:
Template:
4K0J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4096 for 211 contacts (-19.4/contact) +
2D Compatibility (PS) -6236 + (NN) -3691 + (LL) 208
1D Compatibility (HY) -4000 + (ID) 850
Total energy: -18665.0 ( -88.46 by residue)
QMean score : 0.322
(partial model without unconserved sides chains):
PDB file :
Tito_4K0J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K0J-query.scw
PDB file :
Tito_Scwrl_4K0J.pdb
: