Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVDAFFQIIVLLFSLFLGARLGGLGVGYAGGLGVLILCLFLGLNPGKIPFDVILIIMAVISAISAMQKAGGLDYLVQIAEKILRKHPKQINYLAPSVAYFLTILAGTGHTVFSLIPVIVEVSQSQNIKPKAPLSLAVVSSQVAITASPVSAAVVFMSGILEPLGADYLTLLMVWIPTTFLACMLTAFVMGFTDLKLDSDPNYLERLKAGKISPPMMKKEKETSKSAKLSLWIFIGGVVAIVFYASAISKNIALISPVILGRDYAIVSFMLSVATLIAIFCKINANEIAHSSVFKSGMQACVCVLGVAWLGDTFVSNHIDEIKRYASFLIADYPFLLAVALFLASMLLYSQAATSKALIPSVITALGISANHTEHLYIIVASFASVSALFVLPTYPTLLGAIAMDHTGTTKMGRYVFDHAFLIPGVLVVFLSVALGFVVAPLVL |
| 4YDH Chain:B ((99-138)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------WVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YDH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -3189 for 160 contacts (-19.9/contact) +
2D Compatibility (PS) -4237 + (NN) -207 + (LL) 31908
1D Compatibility (HY) -1200 + (ID) 650
Total energy: 22425.0 ( 140.16 by residue)
QMean score : 0.234
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