Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSPDVLLDSFKIALVKKDSKLAFSLIER-LSLEQIKSLDLDALLSLKEMIAQSIELLEKEKEELQSQMHKAKQIQKFLS
2KJF Chain:A ((1-60))
-------LVAYGIA--QGTAEKVVSLINAGLTVGSIISILGGVTVGLSGVFTAVKAAIAKQG------IKKAIQL-----
General information:
TITO was launched using:
RESULT:
Template:
2KJF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19821 for 377 contacts (-52.6/contact) +
2D Compatibility (PS) -6246 + (NN) -2486 + (LL) 1680
1D Compatibility (HY) -4800 + (ID) 700
Total energy: -32373.0 ( -85.87 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_2KJF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KJF-query.scw
PDB file :
Tito_Scwrl_2KJF.pdb
: