Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIFLSCK-----SLLIQRSLEFYLSDCLS------------PVEVCDLVLSDDEKLET------NKPLCFIEERLRKPFTKQSVKEDIKNFYRALKISEKPCEEIQFSKEQKIKQLLEEYTHKLCQIISQ
1VKR Chain:A ((378-453))
RKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLTNFL-------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23538 for 294 contacts (-80.1/contact) +
2D Compatibility (PS) -5774 + (NN) -1296 + (LL) 4844
1D Compatibility (HY) -800 + (ID) 550
Total energy: -27114.0 ( -92.22 by residue)
QMean score : 0.244
(partial model without unconserved sides chains):
PDB file :
Tito_1VKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKR-query.scw
PDB file :
Tito_Scwrl_1VKR.pdb
: