Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVFKRLEKLFSKIQNDKVYGVEHGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLLHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVG-KVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVNLDAQELMDIK
2HW8 Chain:A ((5-227))
------KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKMGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS-----
General information:
TITO was launched using:
RESULT:
Template:
2HW8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116424 for 1772 contacts (-65.7/contact) +
2D Compatibility (PS) -24272 + (NN) -13252 + (LL) 1420
1D Compatibility (HY) -17600 + (ID) 5500
Total energy: -175628.0 ( -99.11 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_2HW8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HW8-query.scw
PDB file :
Tito_Scwrl_2HW8.pdb
: