Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVVGEIKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNERTKDMGSFNIPVIITVYQDKSFTFITKKPPVTDLIKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMEDLNTSTMEAAKKIVMGSARSMGVEVVD
2NXN Chain:B ((2-139))
--KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARSMGVEVV-
General information:
TITO was launched using:
RESULT:
Template:
2NXN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48324 for 938 contacts (-51.5/contact) +
2D Compatibility (PS) -14710 + (NN) -6230 + (LL) 276
1D Compatibility (HY) -12000 + (ID) 4250
Total energy: -85238.0 ( -90.87 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_2NXN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NXN-query.scw
PDB file :
Tito_Scwrl_2NXN.pdb
: