Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTMNSVLECKELALYGGSFDPLHKAHLAIIEQTLELLPFVQLIVLPAYQNPFKKP-CFLDAKTRFKELERALKGMPRVLLSDFEIKQERAVPTIESVLHFQKLYRPKTLYLVIGADCLRHLSSWTNAKELLKRVELVVFERIGYEEIQFKGRYHPLKGIDAP---ISSSAIRASLGV
3HFJ Chain:A ((4-162))
----------RKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGY---KLRTPY-PITTVEIPEFAVSSSLLRERYKE
General information:
TITO was launched using:
RESULT:
Template:
3HFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123913 for 1136 contacts (-109.1/contact) +
2D Compatibility (PS) -16846 + (NN) -8382 + (LL) 1264
1D Compatibility (HY) -11200 + (ID) 2150
Total energy: -161227.0 ( -141.93 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_3HFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HFJ-query.scw
PDB file :
Tito_Scwrl_3HFJ.pdb
: