Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSIRRGDGLNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVDEHDNIFVDDKPTNLEALSAVVKQTDPKTLIDLKSDKSSRFETFISIMDILKEHNHENFSISTQAQ
1NCB Chain:N ((267-321))
-------NGVKGFSYLDGVNTWLGRTISIASRSGYEMLKV--PNALTDDKSKPTQGQTIVLNTDWSGYSGSFMDYWAEGECYRACFYVELIRGRPKEDKVWWTSNSIVSMCSSTEFLGQWDWPDGAKIE
General information:
TITO was launched using:
RESULT:
Template:
1NCB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16082 for 299 contacts (-53.8/contact) +
2D Compatibility (PS) -5843 + (NN) 1046 + (LL) 624
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -22605.0 ( -75.60 by residue)
QMean score : 0.114
(partial model without unconserved sides chains):
PDB file :
Tito_1NCB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NCB-query.scw
PDB file :
Tito_Scwrl_1NCB.pdb
: