Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKKIFLLEDDYLLSESIKEFLEHLGYEVFCAFNGKEAHERLSVERFNLLLLDVQVPEMNSLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFFNDDPIEIMPNIFYHQHALNV--------KGKKEI-LAPKTAQLLEYFLEHKGQIISSQALENNLW-EQAIDDST-LRTYIKVLRKLLGKNCIE-----THKGVGYRFNPL
4KFC Chain:A ((6-225))
----VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQ--WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS---APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITATGIGYRFML-
General information:
TITO was launched using:
RESULT:
Template:
4KFC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129268 for 1425 contacts (-90.7/contact) +
2D Compatibility (PS) -21803 + (NN) -11044 + (LL) 944
1D Compatibility (HY) -14800 + (ID) 2850
Total energy: -178821.0 ( -125.49 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_4KFC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KFC-query.scw
PDB file :
Tito_Scwrl_4KFC.pdb
: