Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVVAKKSLGQHFLMDESFLDRIVNALPPLNSLRLIEIGVGLGDLTLKLLDRYPLK---TYEIDSNLCEKMRARLRAEKKPFQLELVEKDAL---FLKEEEPYFLISNLPYYIATRLVLNALKDPKCRGLLV-MTQKEVALKFCAKDSQNALSVLAHTIGNATLLFDVPPSAFSPPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNNLKKSVSYKEKLDKVLDFLALENQPTSVRASEVKDYLKLLKSVLKG
3FTC Chain:A ((12-181))
-----------LLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLT-KVLLQHPLKKLYVIELDREMVENLKS-IGDER----LEVINEDASKFPFCSLGKELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQKEVAEKLQGKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPPPKVQSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKIPEELLKEAGINPDARVEQLSLEDFFKLYRLIEDS--------------------------
General information:
TITO was launched using:
RESULT:
Template:
3FTC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102260 for 1252 contacts (-81.7/contact) +
2D Compatibility (PS) -17751 + (NN) -10491 + (LL) 3748
1D Compatibility (HY) -16000 + (ID) 2900
Total energy: -145654.0 ( -116.34 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_3FTC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FTC-query.scw
PDB file :
Tito_Scwrl_3FTC.pdb
: