Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDELRAEKSFPSKPYDSLKNKSEFDRVYRKGFKKHNPFFSLFVLDLSKEPPKEKEGFKDP-LSCRLKDRNTLCLLGLSVSKKVGNAVKRNLIKRRLRSLVTRHAALCQGFALVFVPRSDCYHLDFWALEKHFLEMLTSIKDYMNKALKDLKKGMTHTHAKQ
1DWJ Chain:M ((133-192))
-------------------------------------PFVTLFHWDLPQTLQDEYEGFLDPQIIDDFKDYADLCF------EEFGDSVKYWLTINQLYSVPTRGYGSALDAPGRCSPTVDPSCYAGNSSTEPYIVAHHQLLAHAKVVDLYRKNYTHQGGKIG
General information:
TITO was launched using:
RESULT:
Template:
1DWJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2745 for 307 contacts (-8.9/contact) +
2D Compatibility (PS) -5845 + (NN) 1193 + (LL) 1804
1D Compatibility (HY) -5200 + (ID) 1200
Total energy: -11993.0 ( -39.07 by residue)
QMean score : 0.207
(partial model without unconserved sides chains):
PDB file :
Tito_1DWJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DWJ-query.scw
PDB file :
Tito_Scwrl_1DWJ.pdb
: