Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMMQLATKSFKNVECVAFEGLLADLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHKGDASHLVPKEIYPFISKV
4NAT Chain:A ((5-153))
---IAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVL------GTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVP----PYVEKA
General information:
TITO was launched using:
RESULT:
Template:
4NAT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111495 for 1077 contacts (-103.5/contact) +
2D Compatibility (PS) -15206 + (NN) -4305 + (LL) 972
1D Compatibility (HY) -14800 + (ID) 3350
Total energy: -148184.0 ( -137.59 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_4NAT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NAT-query.scw
PDB file :
Tito_Scwrl_4NAT.pdb
: