Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEVICKHYTPLDIASQAIRTCWQSFEYSDDGGCKDRDLIHRVGNIFRHSSTLEHLYYNFEIKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVESFLPLNETNLERAKEFLVFVDDEKVNE-MSVLALENLRVLLS--EHNIKNDLAKYAMPESYKTHLAYSINARSLQNLLTLRSSNKALKEMQDLAKALFDALPYEHQYLFEDCLKH
4GTB Chain:A ((35-220))
----------------AVRAARVSFD-----EERDRHLIEYLMK-HGHETPFEHIVFTFHVKAPIFVARQWF-RHRIASYNELSGRYSKLSY---EFYIP----SPERLEGYKTTIPPERVTEKISEIVDKAYRTYLELIESGVPREVARIVLPLNLYTRFFWTVNARSLMNFLNLRADSHAQWEIQQYALAIARIFKEKCPWTFEAFLKY
General information:
TITO was launched using:
RESULT:
Template:
4GTB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47660 for 1207 contacts (-39.5/contact) +
2D Compatibility (PS) -18302 + (NN) -2491 + (LL) 1944
1D Compatibility (HY) -10800 + (ID) 2800
Total energy: -80109.0 ( -66.37 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_4GTB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GTB-query.scw
PDB file :
Tito_Scwrl_4GTB.pdb
: